converting_utility

converter raw sequence files

Usage: python utility.py -i [ input file with path ] -o [ output ID ] -p [ output path ] -t [ selection between ‘fastq2fasta’,’fasta2tab’,’seqrename’,’tab2fasta’ ] -r [ 1 or 2 ]

Options:
—version show program’s version number and exit
-h, —help show this help message and exit
-i INPUT input fasta,fastq,tabular file included path
-o OUTPUT Output Id
-p PATHOUT Output Pathway
-t T Insert fastq2fasta for conversion fastq to fasta;
Insert fasta2tab per conversion to Fasta to Tabular;
Insert seqrename for change read name with generic seq+line num;
Insert tab2fasta to convert tabular file (2 columns, firt with reads name without ‘>’ and second with sequence.)
-r R 1=forward;2=reverse